Models of stochastic gene expression and Weyl algebra

Vidal, Samuel; Petitot, Michel; Boulier, Francois; Lemaire, Francois; Kuttler, Celine

Document type :

Communication dans un congrès avec actes

Title :

Models of stochastic gene expression and Weyl algebra

Author(s) :

Vidal, Samuel [Auteur]
Laboratoire Paul Painlevé [LPP]
Petitot, Michel [Auteur]

Calcul Formel [CALFOR]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Boulier, Francois [Auteur correspondant]

Calcul Formel [CALFOR]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Lemaire, Francois [Auteur]

Calcul Formel [CALFOR]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Kuttler, Celine [Auteur]

Programming Languages for Biological Modeling and Simulation [BioComputing]
Institut de Recherche Interdisciplinaire [Villeneuve d'Ascq] [IRI]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]

Conference title :

Algebraic and Numeric Biology (ANB 2010)

City :

Hagenberg

Country :

Autriche

Start date of the conference :

2010-07-31

Book title :

Algebraic and Numeric Biology (ANB 2010)

Journal title :

Lecture Notes in Computer Science

Publisher :

Springer

Publication date :

2010-06-17

HAL domain(s) :

Informatique [cs]/Bio-informatique [q-bio.QM]
Sciences du Vivant [q-bio]/Bio-Informatique, Biologie Systémique [q-bio.QM]

English abstract : [en]

This paper presents a symbolic algorithm for computing the ODE systems which describe the evolution of the moments associated to a chemical reaction system, considered from a stochastic point of view. The algorithm, which ...
Show more >This paper presents a symbolic algorithm for computing the ODE systems which describe the evolution of the moments associated to a chemical reaction system, considered from a stochastic point of view. The algorithm, which is formulated in the Weyl algebra, seems more efficient than the corresponding method, based on partial derivatives. In particular, an efficient method for handling conservation laws is presented. The output of the algorithm can be used for a further investigation of the system behaviour, by numerical methods. Relevant examples are carried out.Show less >

Language :

Anglais

Peer reviewed article :

Oui

Audience :

Internationale

Popular science :

Non

ANR Project :

A Uniform Approach for Stochastic Modeling with Spatial Aspects in Systems Biology

Collections :