• English
    • français
  • Help
  •  | 
  • Contact
  •  | 
  • About
  •  | 
  • Login
  • HAL portal
  •  | 
  • Pages Pro
  • EN
  •  / 
  • FR
View Item 
  •   LillOA Home
  • Liste des unités
  • Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189
  • View Item
  •   LillOA Home
  • Liste des unités
  • Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189
  • View Item
JavaScript is disabled for your browser. Some features of this site may not work without it.

The Attributed Pi Calculus with Priorities
  • BibTeX
  • CSV
  • Excel
  • RIS

Document type :
Partie d'ouvrage
DOI :
10.1007/978-3-642-11712-1_2
Title :
The Attributed Pi Calculus with Priorities
Author(s) :
John, Mathias [Auteur]
University of Rostock
Lhoussaine, Cedric [Auteur] refId
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Niehren, Joachim [Auteur correspondant] refId
Programming Languages for Biological Modeling and Simulation [BioComputing]
Modeling Tree Structures, Machine Learning, and Information Extraction [MOSTRARE]
Uhrmacher, Adelinde [Auteur]
University of Rostock
Scientific editor(s) :
Corrado Priami
Rainer Breitling
David Gilbert
Monika Heiner
Adelinde M. Uhrmacher
Book title :
Transactions on Computational Systems Biology XII: Special Issue on Modeling Methodologies
Publisher :
Springer
Publication date :
2010-02-17
ISBN :
978-3-642-11712-1
HAL domain(s) :
Informatique [cs]/Bio-informatique [q-bio.QM]
Sciences du Vivant [q-bio]/Bio-Informatique, Biologie Systémique [q-bio.QM]
English abstract : [en]
We present the attributed $\pi$-calculus for modeling concurrent systems with interaction constraints depending on the values of attributes of processes. The $\pi$-calculus serves as a constraint language underlying the ...
Show more >
We present the attributed $\pi$-calculus for modeling concurrent systems with interaction constraints depending on the values of attributes of processes. The $\pi$-calculus serves as a constraint language underlying the $\pi$-calculus. Interaction constraints subsume priorities, by which to express global aspects of populations. We present a nondeterministic and a stochastic semantics for the attributed $\pi$-calculus. We show how to encode the $\pi$-calculus with priorities and polyadic synchronization $\pi$@ and thus dynamic compartments, as well as the stochastic $\pi$-calculus with concurrent objects spico. We illustrate the usefulness of the attributed $\pi$-calculus for modeling biological systems at two particular examples: Euglena’s spatial movement in phototaxis, and cooperative protein binding in gene regulation of bacteriophage lambda. Furthermore, population-based model is supported beside individual-based modeling. A stochastic simulation algorithm for the attributed $\pi$-calculus is derived from its stochastic semantics. We have implemented a simulator and present experimental results, that confirm the practical relevance of our approach.Show less >
Language :
Anglais
Audience :
Internationale
Popular science :
Non
ANR Project :
A Uniform Approach for Stochastic Modeling with Spatial Aspects in Systems Biology
Collections :
  • Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189
Source :
Harvested from HAL
Files
Thumbnail
  • https://hal.inria.fr/inria-00422969/document
  • Open access
  • Access the document
Thumbnail
  • https://hal.inria.fr/inria-00422969/document
  • Open access
  • Access the document
Thumbnail
  • https://hal.inria.fr/inria-00308970/document/
  • Open access
  • Access the document
Thumbnail
  • https://hal.inria.fr/inria-00422969/document
  • Open access
  • Access the document
Thumbnail
  • https://hal.inria.fr/inria-00308970/document/
  • Open access
  • Access the document
Université de Lille

Mentions légales
Université de Lille © 2017