MAC-INMV-SSR: a web application dedicated ...
Type de document :
Compte-rendu et recension critique d'ouvrage
PMID :
Titre :
MAC-INMV-SSR: a web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains
Auteur(s) :
Cochard, Thierry [Auteur]
Infectiologie et Santé Publique [UMR ISP]
Branger, Maxime [Auteur]
Infectiologie et Santé Publique [UMR ISP]
Supply, Philip [Auteur]
Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 [CIIL]
Sreevatsan, Srinand [Auteur]
Biet, Franck [Auteur]
Infectiologie et Santé Publique [UMR ISP]
Infectiologie et Santé Publique [UMR ISP]
Branger, Maxime [Auteur]
Infectiologie et Santé Publique [UMR ISP]
Supply, Philip [Auteur]
Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 [CIIL]
Sreevatsan, Srinand [Auteur]
Biet, Franck [Auteur]
Infectiologie et Santé Publique [UMR ISP]
Titre de la revue :
Infection, Genetics and Evolution
Pagination :
5 p.
Éditeur :
Elsevier
Date de publication :
2020-01
ISSN :
1567-1348
Mot(s)-clé(s) en anglais :
Database
Genotyping
MAC complex
MLSSR
MLVA
Mycobacterium avium subsp. paratuberculosis
Genotyping
MAC complex
MLSSR
MLVA
Mycobacterium avium subsp. paratuberculosis
Discipline(s) HAL :
Sciences du Vivant [q-bio]/Microbiologie et Parasitologie
Résumé en anglais : [en]
Genotyping of Mycobacterium avium subsp. paratuberculosis (Map) is an indispensable tool for surveillance of this significant veterinary pathogen. For Map, multi-locus variable number tandem repeat analysis (MLVA) targeting ...
Lire la suite >Genotyping of Mycobacterium avium subsp. paratuberculosis (Map) is an indispensable tool for surveillance of this significant veterinary pathogen. For Map, multi-locus variable number tandem repeat analysis (MLVA) targeting mycobacterial interspersed repetitive units (MIRUs) and other variable number variable-number tandem repeats (VNTRs) was established using 8 markers. In the recent past this standard, portable, reproducible and discriminatory typing method has been frequently applied alone or in combinations with multi-locus short-sequence-repeat (MLSSR) sequencing. With the widespread use of these genotyping methods, standardization between laboratories needs to be managed, and knowledge of existing profiles and newly defined genotypes should be indexed and shared. To meet this need, a web application called "MAC-INMV-SSR database" was developed. This freely accessible service allows users to compare MLVA and MLSSR subtype data of their strains with those of existing reference strains analyzed with the same genotyping methods.Lire moins >
Lire la suite >Genotyping of Mycobacterium avium subsp. paratuberculosis (Map) is an indispensable tool for surveillance of this significant veterinary pathogen. For Map, multi-locus variable number tandem repeat analysis (MLVA) targeting mycobacterial interspersed repetitive units (MIRUs) and other variable number variable-number tandem repeats (VNTRs) was established using 8 markers. In the recent past this standard, portable, reproducible and discriminatory typing method has been frequently applied alone or in combinations with multi-locus short-sequence-repeat (MLSSR) sequencing. With the widespread use of these genotyping methods, standardization between laboratories needs to be managed, and knowledge of existing profiles and newly defined genotypes should be indexed and shared. To meet this need, a web application called "MAC-INMV-SSR database" was developed. This freely accessible service allows users to compare MLVA and MLSSR subtype data of their strains with those of existing reference strains analyzed with the same genotyping methods.Lire moins >
Langue :
Anglais
Vulgarisation :
Non
Source :
Fichiers
- https://doi.org/10.1016/j.meegid.2019.104075
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- https://doi.org/10.1016/j.meegid.2019.104075
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- https://hal.archives-ouvertes.fr/hal-02347088/document
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- https://hal.archives-ouvertes.fr/hal-02347088/document
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- document
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- Cochard%20et%20al.%202019-10-04-revised.pdf
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- Cochard%20et%20al.%202019-10-04-revised.pdf
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