Title :

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Author(s) :

Cros, Marie-Josée [Auteur]
Unité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]
de Monte, Antoine [Auteur]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Mariette, Jérôme [Auteur]
Bardou, Philippe [Auteur]
Système d'Information des GENomes des Animaux d'Elevage [SIGENAE]
Grenier-Boley, Benjamin [Auteur]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Gautheret, Daniel [Auteur]
Institut de génétique et microbiologie [Orsay] [IGM]
Touzet, Helene [Auteur]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Gaspin, Christine [Auteur]
Unité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]

Journal title :

RNA

Pages :

1947-56

Publisher :

Cold Spring Harbor Laboratory Press

Publication date :

2011-11

ISSN :

1355-8382

Keyword(s) :

bioinformatic
molecular biology

English keyword(s) :

noncoding RNA
prediction
annotation
biochemistry

HAL domain(s) :

Sciences du Vivant [q-bio]/Biochimie, Biologie Moléculaire
Sciences du Vivant [q-bio]/Microbiologie et Parasitologie

English abstract : [en]

The annotation of noncoding RNA genes remains a major bottleneck in genome sequencing projects. Most genome sequences released today still come with sets of tRNAs and rRNAs as the only annotated RNA elements, ignoring ...
Show more >The annotation of noncoding RNA genes remains a major bottleneck in genome sequencing projects. Most genome sequences released today still come with sets of tRNAs and rRNAs as the only annotated RNA elements, ignoring hundreds of other RNA families. We have developed a web environment that is dedicated to noncoding RNA (ncRNA) prediction, annotation, and analysis and allows users to run a variety of tools in an integrated and flexible manner. This environment offers complementary ncRNA gene finders and a set of tools for the comparison, visualization, editing, and export of ncRNA candidates. Predictions can be filtered according to a large set of characteristics. Based on this environment, we created a public website located at http://RNAspace.org. It accepts genomic sequences up to 5 Mb, which permits for an online annotation of a complete bacterial genome or a small eukaryotic chromosome. The project is hosted as a Source Forge project (http://rnaspace.sourceforge.net/).Show less >

Language :

Anglais

Peer reviewed article :

Oui

Audience :

Internationale

Popular science :

Non

Related reference(s) :

http://rnajournal.cshlp.org/content/17/11/1947

Comment :

Chantier qualité GA

Collections :

• Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189

Source :

Harvested from HAL

Submission date :

2022-06-12T02:08:48Z