Vizitig: A visual tool for colored de ...
Document type :
Pré-publication ou Document de travail
DOI :
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Title :
Vizitig: A visual tool for colored de Bruijn graphs exploration
Author(s) :
Degardins, Bastien [Auteur]
Linking Dynamic Data [LINKS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Mouton, Margaux [Auteur]
Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes [LIMOS]
Guillon, Bruno [Auteur]
Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes [LIMOS]
Institut national polytechnique Clermont Auvergne [INP Clermont Auvergne]
Université Clermont Auvergne [UCA]
Paperman, Charles [Auteur]
Linking Dynamic Data [LINKS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Marchet, Camille [Auteur]
Institut des sciences informatiques et de leurs interactions - CNRS Sciences informatiques [INS2I-CNRS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Linking Dynamic Data [LINKS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Mouton, Margaux [Auteur]
Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes [LIMOS]
Guillon, Bruno [Auteur]
Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes [LIMOS]
Institut national polytechnique Clermont Auvergne [INP Clermont Auvergne]
Université Clermont Auvergne [UCA]
Paperman, Charles [Auteur]

Linking Dynamic Data [LINKS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Marchet, Camille [Auteur]
Institut des sciences informatiques et de leurs interactions - CNRS Sciences informatiques [INS2I-CNRS]
Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 [CRIStAL]
Publication date :
2024
HAL domain(s) :
Informatique [cs]/Bio-informatique [q-bio.QM]
English abstract : [en]
Vizitig is a novel visualization tool designed for the exploration of colored de Bruijn graphs, a structure increasingly used for comparative genomics, pangenomics, and metagenomics. Unlike existing tools such as Bandage, ...
Show more > Vizitig is a novel visualization tool designed for the exploration of colored de Bruijn graphs, a structure increasingly used for comparative genomics, pangenomics, and metagenomics. Unlike existing tools such as Bandage, Vizitig supports the simultaneous visualization of multiple genomes or samples by leveraging color-coding schemes to highlight shared and unique sequences or meta-data. Vizitig allows users to efficiently manage, navigate, and render graphs annotated with various metadata, such as genomic features or sample-specific information. Developed as a cross-platform Python application, Vizitig integrates a user-friendly web interface and a command-line-free environment, making it accessible to a broader audience of genomic researchers.Show less >
Show more > Vizitig is a novel visualization tool designed for the exploration of colored de Bruijn graphs, a structure increasingly used for comparative genomics, pangenomics, and metagenomics. Unlike existing tools such as Bandage, Vizitig supports the simultaneous visualization of multiple genomes or samples by leveraging color-coding schemes to highlight shared and unique sequences or meta-data. Vizitig allows users to efficiently manage, navigate, and render graphs annotated with various metadata, such as genomic features or sample-specific information. Developed as a cross-platform Python application, Vizitig integrates a user-friendly web interface and a command-line-free environment, making it accessible to a broader audience of genomic researchers.Show less >
Language :
Anglais
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Submission date :
2024-10-15T02:02:54Z
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