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Searching for alternate RNA structures in ...
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Document type :
Communication dans un congrès avec actes
DOI :
10.15455/CMSR.2014.0002
Title :
Searching for alternate RNA structures in genomic sequences
Author(s) :
Saffarian, Azadeh [Auteur]
Bioinformatics and Sequence Analysis [BONSAI]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Giraud, Mathieu [Auteur] refId
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Touzet, Helene [Auteur] refId
Bioinformatics and Sequence Analysis [BONSAI]
Laboratoire d'Informatique Fondamentale de Lille [LIFL]
Conference title :
Computational Methods for Structural RNAs, CMSR'14
City :
Strasbourg
Country :
France
Start date of the conference :
2014-09-07
Journal title :
1st workshop on Computational Methods for Structural RNAs
Publication date :
2014
HAL domain(s) :
Informatique [cs]/Bio-informatique [q-bio.QM]
English abstract : [en]
We introduce the concept of RNA multi-structures, that is a formal grammar based framework specifically designed to model a set of alternate RNA secondary structures. Such alternate structures can either be a set of ...
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We introduce the concept of RNA multi-structures, that is a formal grammar based framework specifically designed to model a set of alternate RNA secondary structures. Such alternate structures can either be a set of suboptimal foldings, or distinct stable folding states, or variants within an RNA family. We provide several such examples and propose an efficient algorithm to search for RNA multi-structures within a genomic sequence.Show less >
Language :
Anglais
Peer reviewed article :
Oui
Audience :
Internationale
Popular science :
Non
Collections :
  • Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189
Source :
Harvested from HAL
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  • https://hal.archives-ouvertes.fr/hal-01084319/document
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