Title :

Parallel Hybrid Metaheuristic for Multi-objective Biclustering in Microarray Data

Author(s) :

Seridi, Khedidja [Auteur]
Parallel Cooperative Multi-criteria Optimization [DOLPHIN]
Jourdan, Laetitia [Auteur]
Parallel Cooperative Multi-criteria Optimization [DOLPHIN]
Talbi, El-Ghazali [Auteur]
Parallel Cooperative Multi-criteria Optimization [DOLPHIN]

Conference title :

IPDPSW 2012 - 26th IEEE International Parallel and Distributed Processing Symposium Workshops

City :

Shanghai

Country :

Chine

Start date of the conference :

2012-05-21

Book title :

Parallel and Distributed Processing Symposium Workshops & PhD Forum (IPDPSW), 2012 IEEE 26th International

Publisher :

IEEE

Publication date :

2012

HAL domain(s) :

Sciences du Vivant [q-bio]/Bio-Informatique, Biologie Systémique [q-bio.QM]

English abstract : [en]

To deeper examine the gene expression data, a new data mining task is more more used: the biclustering. Biclustering consists in extracting genes that behave similarly under some experimental conditions. As the Biclustering ...
Show more >To deeper examine the gene expression data, a new data mining task is more more used: the biclustering. Biclustering consists in extracting genes that behave similarly under some experimental conditions. As the Biclustering problem is NP-Complete in most of its variants, many heuristics and meta-heuristics have been deisgned to solve it. Proposed algorithms in literature allow the extraction of interesting biclusters but are often time consuming. In this work, we propose a new parallel hybrid multi-objective metaheuristic based on the well known multi objective metaheuristic NSGA-II (Non-dominated Sorting Genetic Algorithm II), CC (Cheng and Church) heuristic and a multi-objective local search, PLS-1 (Pareto Local Search I). Experimental results on real data sets show that our approach can find significant biclusters of high quality. The speed-up of our algorithm is important with regard to the sequential version.Show less >

Language :

Anglais

Peer reviewed article :

Oui

Audience :

Internationale

Popular science :

Non

Collections :

• Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189

Source :

Harvested from HAL