Wavelet-based clustering for mixed-effects functional models in high dimension

Giacofci, Madison; Lambert-Lacroix, Sophie; Briend, Guillemette; Picard, Franck

Document type :

Compte-rendu et recension critique d'ouvrage

DOI :

10.1111/j.1541-0420.2012.01828.x

Title :

Wavelet-based clustering for mixed-effects functional models in high dimension

Author(s) :

Giacofci, Madison [Auteur]
Statistique Apprentissage Machine [SAM]
Lambert-Lacroix, Sophie [Auteur]
Biologie Computationnelle et Mathématique [TIMC-IMAG-BCM]
Briend, Guillemette [Auteur]
MOdel for Data Analysis and Learning [MODAL]
An algorithmic view on genomes, cells, and environments [BAMBOO]
Picard, Franck [Auteur]
An algorithmic view on genomes, cells, and environments [BAMBOO]
Statistique en grande dimension pour la génomique [LBBE]

Journal title :

Biometrics

Pages :

31-40

Publisher :

Wiley

Publication date :

2013-03

ISSN :

0006-341X

English keyword(s) :

Wavelets
Functional data
Mixed models
Clustering

HAL domain(s) :

Statistiques [stat]/Méthodologie [stat.ME]
Statistiques [stat]/Applications [stat.AP]

English abstract : [en]

We propose a method for high-dimensional curve clustering in the presence of interindividual variability. Curve clustering has longly been studied especially using splines to account for functional random effects. However, ...
Show more >We propose a method for high-dimensional curve clustering in the presence of interindividual variability. Curve clustering has longly been studied especially using splines to account for functional random effects. However, splines are not appropriate when dealing with high-dimensional data and can not be used to model irregular curves such as peak-like data. Our method is based on a wavelet decomposition of the signal for both fixed and random effects. We propose an efficient dimension reduction step based on wavelet thresholding adapted to multiple curves and using an appropriate structure for the random effect variance, we ensure that both fixed and random effects lie in the same functional space even when dealing with irregular functions that belong to Besov spaces. In the wavelet domain our model resumes to a linear mixed-effects model that can be used for a model-based clustering algorithm and for which we develop an EM-algorithm for maximum likelihood estimation. The properties of the overall procedure are validated by an extensive simulation study. Then, we illustrate our method on mass spectrometry data and we propose an original application of functional data analysis on microarray comparative genomic hybridization (CGH) data. Our procedure is available through the R package curvclust which is the first publicly available package that performs curve clustering with random effects in the high dimensional framework (available on the CRAN).Show less >

Language :

Anglais

Popular science :

Non

Collections :

Laboratoire Paul Painlevé - UMR 8524

Source :

Harvested from HAL

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